Pacbio Long Reads Compatible Software and Tools
The following software packages are known to be compatible with PacBio® data, in addition to PacBio's own SMRT® Analysis suite. All packages are believed to be...2601 days ago
LoRDEC: a hybrid error correction program for long, PacBio reads
...specially intended for PacBio reads. It uses a hybrid strategy, m...ning that it uses two sets of reads: the reference read set, whos.... Usually, errors in PacBio reads include many insertions and d...(DBG) representing the short reads, and seeks a corrective seque...2575 days ago
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CLA: Contig-Layout-Authenticator
...mina paired-end sequencing, we developed Contig-Layout-Authenticator (CLA). The CLA pipeline can scaffold reference-sorted contigs based on paired reads, resulting in better assemble...2550 days ago
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A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
...the same data sets as used by the original assembler. iCORN, that enables errors in the consensus sequence to be corrected by iteratively mapping reads to the current assembly. An i...2543 days ago
CABOG: Celera Assembler with Best Overlap Graph
...was the first to assemble environmental sequence from the oceans (Sargasso Sea in 2004 and Global Ocean Sampling in 2007). It was first to combine reads from first-generation Sanger...2540 days ago
Pollux: platform independent error correction of single and mixed genomes
...troduced errors are 20 to 70 times more rare than successfully corrected errors. Furthermore, we show that the quality of assemblies improves when reads are corrected by our software...2536 days ago