2378 days ago
2378 days ago
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
...han ten-times greater than an Illumina-only assembly (678kb versus 59.9kbp), and has greater than 99.88% consensus identity when compared to the reference. Furthermore, the assembly wi...2370 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
...l providing the following benefits: PLAST is a high-performance sequence comparison tool designed to compare two sets of sequences (query vs. reference), Reduces the processing tim...2368 days ago
2360 days ago
Mugsy: multiple whole genome alignment tool
...progressive multiple alignment strategy from Seqan::TCoffee. Mugsy accepts draft genomes in the form of multi-FASTA files and does not require a reference genome. To cite Mugsy, use:...2360 days ago
2356 days ago
NanoSim: nanopore sequence read simulator based on statistical characterization.
...ut to the next step, the simulation stage. The simulation stage uses the model built in the previous step to produce in silico reads for a given reference genome. NanoSim is written in...2351 days ago
TRRUST v2: an expanded reference database of human and mouse transcriptional regulatory interactions
TRRUST contains 8,444 and 6,552 TF-target regulatory relationships of 800 human TFs and 828 mouse TFs, respectively. They have been derived from 11,237 pubmed articles,...2347 days ago
AIRVF: a filtering toolbox for precise variant calling in Ion Torrent sequencing
...works on flowgram, raw and mapped reads and called variants to reduce artifact-driven false variant calls. Tests on sequencing data of standard reference material showed up to ∼98...2347 days ago