2129 days ago
Perl script to extract sequence by Ids from multifasta file !
...q =~ /^>*(\S+)/; # parse ID as first word in FASTA header if (exists($ids{$id})) { $seq =~ s/^>*.+\n//; # remove FASTA header $seq =~ s/\n//g; # remove endlines print ">$id...2098 days ago
2078 days ago
Installing Platypus on Ubuntu !
...ckages will be upgraded: libpython3.6 libpython3.6-minimal libpython3.6-stdlib python3.6 python3.6-minimal 5 upgraded, 4 newly installed, 0 to remove and 138 not upgraded. Need t...2022 days ago
1554 days ago
1555 days ago
Perl script to remove duplicated lines !
#!/usr/bin/perl use strict; use warnings; { $_ = ; my $next_line; while( $next_line = ) { #print "current line: $_ -- next line: $next_line$/";...1563 days ago
Install Nucmer on Linux / Ubuntu
...alled: gawk Suggested packages: gawk-doc The following NEW packages will be installed: gawk mummer 0 upgraded, 2 newly installed, 0 to remove and 12 not upgraded. Need to...1552 days ago
Install python pip and numpy on Linux / Ubuntu
...lt python-pip python-pip-whl python-secretstorage python-setuptools python-wheel python-xdg python2.7-dev 0 upgraded, 19 newly installed, 0 to remove and 12 not upgraded. Need to...1553 days ago
Install miniasm in Linux / Ubuntu
...onal packages will be installed: minimap The following NEW packages will be installed: miniasm minimap 0 upgraded, 2 newly installed, 0 to remove and 12 not upgraded. Need to...1553 days ago