Results for "Representation"
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Nucl2Vec: Local alignment of DNA sequences using Distributed Vector Representation
We demonstrate a novel approach forlocal alignment of DNA reads with respect to reference genome.For this process we have used Skip-gram model for creatingencoding(Nucl2Vec...1162 days ago
- ...enomic information and public ontologies, making sense of these datasets demands integrative and easy-to-use software tools. Moreover, network representation of chromatin interaction maps...
2885 days ago
- ...assembler based on the concept of string graphs. The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads. More...
2721 days ago
- ...ualizes set intersections in a matrix layout and introduces aggregates based on groupings and queries. The matrix layout enables the effective representation of associated data, such as t...
2594 days ago
AVID: A Global Alignment Program
...We have also performed a quantitative comparison of AVID with other popular alignment tools. To this end, we have established a format for the representation of alignments and methods for...2554 days ago
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
...99.88% consensus identity when compared to the reference. Furthermore, the assembly with the long nanopore reads presents a much more complete representation of the features of the genome...2365 days ago
- ...t and mapping &mdash mapping DNA-seq and RNA-seq reads Genome assembly &mdash k-mers, De Brujin graph construction and representation, long-read technology and rea...
2365 days ago
NovoGraph: building whole genome graphs from long-read-based de novo assemblies
NovoGraph: building whole genome graphs from long-read-based de novo assemblies An algorithmically novel approach to construct a genome graph representation of long-read-based de no...2014 days ago
genoPlotR - plot gene and genome maps project!
...lows the user to read from usual format such as protein table files and blast results, as well as home-made tabular files. Features Linear representation of several segments of DNA C...1987 days ago
UpSetR: An R Package for the Visualization of Intersecting Sets and their Properties
...ualizes set intersections in a matrix layout and introduces aggregates based on groupings and queries. The matrix layout enables the effective representation of associated data, such as t...1940 days ago
