2626 days ago
gbtools: Interactive Visualization of Metagenome Bins in R
...ch annotations to plot. Bins can be manually defined from plots, or be imported from third-party binning tools and overlaid onto plots, such that results from different methods can be...2607 days ago
Enrichr: a comprehensive gene set enrichment analysis
...dded to Enrichr including the ability to submit fuzzy sets, upload BED files, improved application programming interface and visualization of the results as clustergrams. Overall, Enr...2575 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
...vals from their observed adjacencies in modern species. We combine the results from this method with data fr...n, our theoretical analyses and computer simulations indicate that our results are reasonably accurate and t...2554 days ago
ANGES: reconstructing ANcestral GEnomeS maps
...s markers in extant related genomes. Download Program, version 1.01 (July 10, 2012, documentation updated in August 2014) Examples with results (featured ancestors: boreoeut...2554 days ago
GeneProf: analysis of high-throughput sequencing experiment
...ys). Comprehensive Resource:GeneProf provides a comprehensive resource of fully analyzed next-generation sequencing data. Experimental results can be easily accessed and co...2506 days ago
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
...les in a folder and then output three folders: good, bad and QC folders, which contains good reads, bad reads and the QC results of each fastq file/pair.Curre...2375 days ago
CHSMiner: a GUI tool to identify chromosomal homologous segments
...tion/deletion and inversion could cause the degeneration of CHSs. Results Here we present a Java softw...s friendly graphical interface allows interactive visualization of the results. We tested the software on bo...2370 days ago
poRe: an R package for the visualization and analysis of nanopore sequencing data
...cations. To enable these applications, the bioinformatics community will need to design and build a suite of tools specifically for MinION data. Results: Here we present poRe, a...2365 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
...ned to compare two sets of sequences (query vs. reference), Reduces the processing time of sequences comparisons while providing highest quality results, Contains a fully integrated...2357 days ago