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Roary: the Pan Genome Pipeline
Roary is a high speed stand alone pan genome pipeline, which takes annotated assembli...his analysis using existing methods would take weeks and hundreds of GB of RAM. Roary is not intended for meta-geno...1945 days ago
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Frequent parameters for bioinformatics tools !
...ICE_SITE_REGION -upDownStreamLen 250 bcftools consensus (phylogenetic tree) --haplotype 1 fasttreemp -nt -boot 100 roary -e -n -cd 100 -g 100000...1300 days ago
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Roary: the Pan Genome Pipeline
Roary is a high speed stand alone pan genome pipeline, which takes annotated assemblies in GFF3 format (produced by Prokka (Seemann, 2014)) and calculates the pan genome. Using a standard desktop PC, it can analyse datasets with thousands of samples, something which is computationally infeasible ...Tags: Roary, Pan, Genome, Pipeline
1945 days ago
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Comment on "Roary: the Pan Genome Pipeline"
Tutorial at http://sepsis-omics.github.io/tutorials/modules/roary/1945 days ago
