3937 days ago
DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
DAVI consists of models for both global and local alignm...erformance of DAVI against existing state-of-the-art tool sets and found that its accuracy and performance is comparable to existing tools used for bench-marking. We f...1139 days ago
Nucl2Vec: Local alignment of DNA sequences using Distributed Vector Representation
We demonstrate a novel approach forlocal alignment of DNA reads with respect to ref...nment , while achieving accuracy comparable to existingdefacto standard BWA-MEM tool. https://prakharg24.github....1139 days ago
Taverna Workflow Management System
Taverna is an open source domain independent Workflow Management System – a suite of tools used to design and execute s...kflows). Taverna is also available as a Command Line Tool for a quick execution of work...3908 days ago
PLOS Computational Biology: Translational Bioinformatics educational resources
PLOS present collection of Education articles: “Translational Bioinform...n is presented as an online “book” which could serve as a reference tool for a graduate level introduc...3907 days ago
Next Generation Sequencing (NGS) Tutorials
Institute of computational biomedicine, Cornell Universi...ng data PubMed: 21478889 SNiPlay: a web-based tool for detection, management and...http://www.ncbi.nlm.nih.gov/pubmed/23657089 GATK: a Toolkit for Genome Analysis h...3480 days ago
Latest paper on comparison of mapping tools
A. Hatem, D. Bozdag, A. E. Toland, U. V. Catalyurek "Benchmarking short sequence mapping tools" BMC Bioinformatics, 14(1):1...ordjournals.org/content/28/24/3169 Some new Mapping tool links: GSNAP http://researc...3889 days ago
Bioinformatics software for biologists in the genomics era
The genome sequencing revolution is approaching a landma...al paradigms under which biologist-friendly software tools are designed and developed t...er the current supposition that biologists should re-tool and become programmers when a...3779 days ago
3655 days ago
Ten recommendations for creating usable bioinformatics command line software
Bioinformatics software varies greatly in quality. In terms of usabil...mand line interface is the first experience a user will have of a tool. Unfortunately, this is often also the last time a tool will be used. Here I present...3611 days ago