Results for "SAM tool"
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HGA tool version 1.0 This tool helps to apply the Hierarchical Genome Assembly (HGA) method. The tool will apply: 1. Partitioning a...2724 days ago
- Bipype is a very useful program, which prepare a lot of types of bioinformatics analyses. There are three input o...ype finds the SA coordinates of the input reads and generates alignments in the SAM...
2722 days ago
- PRISM is a software for split read (reads which span across a structrual variant --...tandom duplications with the direction of discordant read pairs. PRISM_CTX is a tool for detecting inter-chromosom...
2712 days ago
CISA: Contig Integrator for Sequence Assembly
A plethora of algorithmic assemblers have been proposed...e different sets of contigs for bacterial genomes. A tool, named CISA, has been develop...emblers and the hybrid assemblies merged by existing tools. This tool is implemented in...2708 days ago
- ...data (reads and contigs). The tool is written in Python 2.7. It...ontigs (instead of providing .sam files). The arguments accept...files are stored. These are .sam files produced after mapping r...ed list of) either .fastq or .sam file(s) corresponding to the f...
2710 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
MeGAMerge MeGAMerge (A tool to merge assembled contigs, long reads from meta...Description MeGAMerge is a perl based wrapper/tool that can accept any number of...quirements: You will need to have the following tools installed and in $PATH, or a...2704 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is...s of Prodigal include: Speed: Prodigal is an extremely fast gene recognition tool (written in very vanilla C)....2694 days ago
- MetaBAT, An Efficient Tool for Accurately Reconstructing Single Genomes from Complex Microbial Communities...utational efficiency. Applying MetaBAT to an assembly from 1,704 human gut samples formed 1,634 genom...
2627 days ago
- v0.0 by Glenn Hickey (hickey@soe.ucsc.edu) Progressive...H environment variable. In order to run the included tools (ex hal2maf) in the submodul...uild process, you are unlikely to be able to use the tool. Please submit a GitHub issue...
2675 days ago
iTOL: interactive Tree Of Life
Interactive Tree Of Life is an online tool for the display and manipulation of phylogenetic trees. It provides most of the features available in other tree viewers, and offers a novel...2661 days ago
