BOL

Results for "SAM tool"

Wire posts

• • Rahul Agarwal@raag

  

  https://cran.r-project.org/web/packages/syuzhet/vignettes/syuzhet-vignette.html #sentiment #extraction #nlp #tool

  2224 days ago

• • Jit@jit.aber

  

  Bioinformatics tutorial https://jasonjwilliamsny.github.io/wrangling-genomics/01-automating_a_workflow.html #Workflow #Tutorial #BAM #SAM #SNP

  2213 days ago

• • Jit@jit.aber

  

  Ribbon genomics http://genomeribbon.com/ #Visualization #Ribbon #Graph #Genome #BAM #SAM #Mummer

  1990 days ago

• • BioJoker@biojoker

  

  TIGER: tiled iterative genome assembler https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3526431/ #genome #assembly #tool

  1959 days ago

• • Jit@jit.aber

  

  samtools view -Sb pilonCor_round1.fasta.out.sam | samtools sort -m 4G -@ 40 -o pilonCor_round1.fasta.out.sorted.bam - && samtools index -@ 40 pilonCor_round1.fasta.out.sorted.bam #SAM2BAM

  1921 days ago

• • Jit@jit.aber

  

  polySNP: an analysis tool for quantitative sequencing https://www.nybg.org/files/scientists/dlittle/polySNP.html #SNP #polySNP #analysis #peak #Area

  1908 days ago

• • Abhimanyu Singh@abhimanyu

  

  https://broadinstitute.github.io/picard/explain-flags.html What does the SAM flags means #SAM #Flag

  1846 days ago

• • Jit@jit.aber

  

  Get the secondary hists reads count from SAM awk '{ print $2 }' out.sam| grep "2048" | wc -l #SAM #BAM #Secondary #Hits

  1842 days ago

• • BioJoker@biojoker

  

  http://www-labgtp.na.icar.cnr.it/decontaminer/ decontaMiner, a tool for detecting contaminating organisms in human unmapped sequences. #Tools #decontaMiner #Tool #Contamination

  1837 days ago

• • LEGE@lege

  

  #Estimate the #insert #size with mapped reads $ head -10000 mappings.sam | awk '{ if ($9 > 0) { N+=1; S+=$9; S2+=$9*$9 }} END { M=S/N; print "n="N", mean="M", stdev="sqrt ((S2-M*M*N)/(N-1))}'

  1628 days ago

• « Previous
• 1
• 2
• 3
• 4
• 5
• 6
• Next »