Results for "SOAP"
Top-level pages
Commercial and public next-gen-seq (NGS) software
...of the sequence files as an input for alignment to a reference sequence or a set of reference sequences. Authors are from BCGSC. Paper is here. SOAP - SOAP (Short Oligonucleotide Alignm...3533 days ago
Software packages for next gen sequence analysis
...the sequence files as an input for alignment to a reference sequence or a set of reference sequences. Authors are from BCGSC. Paper is here. * SOAP - SOAP (Short Oligonucleotide Alignm...3257 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...arse Reference genome: FASTA Output: VCF SOAPindel Description: detects...encing Input: files with read alignment can be SOAP or SAM formats, users must al...Input: BAM Output: either VCF or ANNOVAR SOAPsnp Description: based on B...2923 days ago
Frequent Paired-end reads (PE 2x100) mapping command lines
...q stampy.py -g hs37m -h hs37m -o r12.stampy.sam -M r1.fq,r2.fq soap -D hs37m.fa.index -a r1.fq -b r2.fq -l 32 -g 3 -u dummy -2 dummy -o r12.soap2197 days ago
List of non-commercial NGS genotype-calling software
...cially benefit the growing number of studies using low- to medium-coverage data. A list of programs for genotype and SNP calling : SOAP2 http://soap.genomics.org.cn/index.html S...2111 days ago
