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Results for "Samtool"

Wire posts

  • Surabhi Chaudhary

    #BAM file to fasta #conversion with #Samtool: samtools view filename.bam | \ awk '{OFS="\t"; print ">"$1"\n"$10}' - > filename.fasta

    2958 days ago

  • Surabhi Chaudhary

    #BAM file to #fastaq #conversion with #Samtool: samtools view filename.bam | awk '{OFS="\t"; print "@"$1"\n"$10"\n+\n"$11}' >| filename.fastq

    2958 days ago

Bio-Scripts

  • Shruti Paniwala

    Samtools commands for bioinformatician !

    ...sam # -o : output file name samtools view -b -S -o sal_sej.bam sa...# -f INT show flag matches samtools -f 4 sal_sej.bam | less #...# always index sorted files samtools index sal_sej_sorted.bam.bam...### results into txt file samtools depth /path/to/sorted_bam.ba...

    1596 days ago

Tags

  • Surabhi Chaudhary

    #BAM file to fasta #conversion with #Samtool: samtools view filename.bam | \ awk '{OFS="\t"; print ">"$1"\n"$10}' - > filename.fasta

    Tags: BAM, conversion, Samtool

    2958 days ago

  • Surabhi Chaudhary

    #BAM file to #fastaq #conversion with #Samtool: samtools view filename.bam | awk '{OFS="\t"; print "@"$1"\n"$10"\n+\n"$11}' >| filename.fastq

    Tags: BAM, fastaq, conversion, Samtool

    2958 days ago

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