Results for "Scaffolding"
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caffMatch is a novel scaffolding tool based on Maximum-Weight Matching able to produce high-quality scaffolds from NGS data (reads and contigs). The tool is written in Python 2.7. I...2697 days ago
- ...teny to the genome of some related species (reference-based mode) Scaffolding In reference-based mod...r, this is experimental implementation! Consider closing gaps after scaffolding....
2691 days ago
- SSPACE standard is a stand-alone program for scaffolding pre-assembled contigs using NGS paired-read data. It is unique in offering the possibility to manually control the scaffolding process. By using the distanc...
2554 days ago
CLA: Contig-Layout-Authenticator
...xtensively on various bacterial genome datasets for the ordering and scaffolding of large repetitive contigs....ool has been validated and compared favorably with other widely-used scaffolding and ordering tools using both...2554 days ago
- This tutorial will serve as an example of how to use free and open-source genome assembly and secondary scaffolding tools to generate high quality assemblies of bacterial sequence...
2554 days ago
- ...s well as source code) for these tools are freely available here: Scaffolding using Optical Restriction Map...site locations in a genome. This information can be quite useful in scaffolding contigs from a shotgun assemb...
2539 days ago
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap-filling. If you encounter any issues, please co...
2537 days ago
npScarf: Scaffolding and Completing Assemblies in Real-time Fashion
npScarf (jsa.np.npscarf) is a program that scaffolds and completes draft genomes assemblies in real-time with Oxford Nanopore sequencing. The pipeline can run on a c...2536 days ago
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
GRASS (GeneRic ASsembly Scaffolder)-a novel algorithm for scaffolding second-generation sequencing assemblies.... GRASS offers a mixed-integer programming formulation of the contig scaffolding problem, which combines conti...2536 days ago
- ...d architecture that integrated shared-memory multi-threading, point-to-point message passing, and remote direct memory access. The assembly and scaffolding were performed using an itera...
2488 days ago
