Results for "Scoring"
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List of In-silico Binding Site Prediction Tools
...d trajectories) is out now. fpocket includes two other programs (dpocket & tpocket) that allow you to extract pocket descriptors and test own scoring functions respectively. Furth...3758 days ago
Commercial and public next-gen-seq (NGS) software
...Tao Liu from Xiaole Shirley Liu's Lab. PeakSeq - PeakSeq: Systematic Scoring of ChIP-Seq Experiments Relative to Controls. a two-pass approach for scoring ChIP-Seq data relative to con...3532 days ago
Software packages for next gen sequence analysis
...ao Liu from Xiaole Shirley Liu's Lab. * PeakSeq - PeakSeq: Systematic Scoring of ChIP-Seq Experiments Relative to Controls. a two-pass approach for scoring ChIP-Seq data relative to con...3256 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...CADD Description: Combined Annotation Dependent Depletion; tool for scoring SNV deletions/insertions; &ld...CAROL Description: (Wellcome Trust Sanger); Combined Annotation scoRing toOL; Combined functional ann...2922 days ago
Tools to Predict the Impact of Missense Variants !
...or domains that already include a high fraction of pathogenic variantsh Combined Annotation Dependent Depletion (CADD)“CADD is a tool for scoring the deleteriousness of single...2217 days ago
Protein-Protein Interaction Sites Predictions !
...tification of optimal surface patches with the lowest docking desolvation energy values PINUP Protein binding site prediction with an empirical scoring function Other Sites (DNA, R...2216 days ago
Tools for Protein-Protein Docking !
...TShape complementarity and electrostatics Re-scoring and clustering. Refinement of...nd Lennard-Jones potentialminimization and re-scoring with multiple filters HEX G...obal rigid search:FFTShape complementarity rescoring by binding electrostatics and...2216 days ago
Understanding BLASTn output format 6 !
...ical matchesmismatch Number of mismatchespositive Number of positive-scoring matchesgapopen Number of ga...openingsgaps Total number of gapsppos Percentage of positive-scoring matchesframes Query and su...2152 days ago
