AVID: A Global Alignment Program
A new global alignment method called AVID. The method is designed to be fast, memory efficient, and practical for sequence alignments of large genomic regions up to megabases long. We...2547 days ago
Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
...versatile program to create random shotgun and amplicon sequence libraries based on DNA, RNA or proteic reference sequences provided in a FASTA file....elp decide between alternative sequencing methods for a sequence-based project, e.g. should th...2547 days ago
dbCAN: a web server and DataBase for automated Carbohydrate-active enzyme ANnotation
...th its location in all the relevant full-length CAZyme proteins in all sequenced genomes; dbCAN provide...subfamily classification of the existing CAZyme families based on sequence similarities; dbCAN make all...2542 days ago
Genome Annotation Transfer Utility (GATU)
...n annotated. For example, whenever a new strain of SARS coronavirus is sequenced, it is possible, using GATU,...RS CoV. This saves researchers from tedious manual annotation of these sequences. The program utilizes tBLAS...2542 days ago
2542 days ago
NovelSeq: Novel Sequence Insertion Detection
The NovelSeq framework is designed to detect novel sequence insertions using high throughput paired-end whole genome sequencing data. http://novelseq.sourceforge.net/Home Paper at https://www.ncbi.nlm.nih.gov/pubmed/203857262531 days ago
2515 days ago
DIYA: a bacterial annotation pipeline for any genomics lab
DIY Genomics is an open source bioinformatics consortium intended to bring a collection of tools and libraries into the hands of small scale genomics labs for the process of sequence assembly and annotation. Projects include DIYA, MGAP, CRISPR, and DIYGV http://gmod.org/wiki/Diya2510 days ago
I-PV: Interactive Protein Sequence Visualization
I-PV is a interactive data visualization software designed for inspection of protein sequences and mutation information. It is mainly used for Genetics and Bioinformatics. So what exactly makes it standout? http://i-pv.org/ipv_rec2507 days ago
2496 days ago