Results for "Sequence"
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OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembler) is a sequence assembly program (http://en.wikipedia.org/wiki/Sequence_assembly). It uses information from paired-end/mate-pair/long reads to order and orient the intermed...2789 days ago
- Fermi is a de novo assembler with a particular focus on assembling Illumina short sequence reads from a mammal-sized genome. In addition to the role of a typical assembler, f...
2789 days ago
CGView - Circular Genome Viewer
...e bacterial genomes. GView is useful for producing high-quality genome maps for use in publications and websites, or as a visualization tool in a sequence annotation pipeline. Users ca...2778 days ago
BLAST Ring Image Generator (BRIG)
...Features: Images show similarity between a central reference sequence and other sequences as concentric rings. BRIG w...ead-mapping files enabling genomic regions present in unassembled sequence data from multiple samples to...2767 days ago
- DECIPHER is a software toolset that can be used to maintain, analyze, and decipher large amounts of DNA sequence data. To install DECIPHER, see the Downloads page. To begin using DECIP...
2767 days ago
- ...able (Arbitrarily parallelizable across multiple nodes using MPI) memory efficient. (Even a single node with 16GB of ram can handle over 1Gbp of sequence) unlimited by pattern length...
2767 days ago
- ...or more breakpoints which make up a structural variant. A breakpoint is defined as a region or point where the sample sequence has altered from the reference sequence. Minimum interpretation is ma...
2766 days ago
- ...agenome is phylogenetic classification of raw sequence reads into groups representin...revious technologies. Methods for classifying sequences as short as 100 base pairs (...v models (IMMs) to taxonomically classify DNA sequences, can accurately classify rea...
2757 days ago
Entrez Direct: E-utilities on the UNIX Command Line
Entrez Direct (EDirect) is an advanced method for accessing the NCBI's suite of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a UN...2748 days ago
- ...alization tool that displays alignments along both reference and query sequences, along with any associated v...nt in this sample made simple in Ribbon: the translocation of a 4.4 kb sequence deleted from chr19 and insert...
2747 days ago
