Results for "Sequence"
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...bPiper was designed for targeted sequence capture, in which DNA sequenc...tools in order to extract target sequences from high-throughput DNA seq...oci simultaneously based on bait sequences. HybPiper pipeline starts wi...file with the translated protein sequence. HybPiper also includes post...2748 days ago
Maq: Mapping and Assembly with Quality
...assembly by mapping short reads to reference sequences. Maq is a project hosted by&...steps to try Maq. All you need is a reference sequence file in the FASTA format....rectory. Simulate diploid reference and read sequences, map reads, call variants an...2730 days ago
- ...oreads and uses the resulting contigs to generate a modified reference sequence. In this way, it can very qui...and at no additional sequencing cost, generate new, modified reference sequence that is closer to the actual...
2727 days ago
- ...r efficient data manipulation (mostly genomic sequences, alignments, variation etc.)...for various analyses. It also features three sequence alignment packages: Sats...context-sensitive local aligner for diverged sequences with large gaps. Access&nbs...
2724 days ago
- ...analyses. There are three input options: amplicons, WGS (whole genome sequences) and metatranscriptomic data...ts in the SAM format given single-end reads, aligns reads to reference sequence(s). All of these analyses wil...
2721 days ago
- ...the concept of string graphs. The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads. More at https://gith...
2714 days ago
- Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput seq...s by finding the adapter or primer sequences in an error-tolerant way. It...put data, without removing adapter sequences at all. Cutadapt comes with...
2708 days ago
CISA: Contig Integrator for Sequence Assembly
A plethora of algorithmic assemblers have been proposed for the de novo assembly of genomes, however, no individual assembler guarantees the optimal assembly for diverse...2707 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
...ssembled contigs, long reads from metagenomic sequencing runs) Description MeGAMerge is a perl based wrapper/tool that can accept any number of sequence (FASTA) files containing asse...2703 days ago
- LAST can: Handle big sequence data, e.g: Compare two vertebrate geno...reliability of each aligned column. Use sequence quality data properly....proteins, with frameshifts. Compare PSSMs to sequences Calculate the likelihood of...
2703 days ago
