2179 days ago
SOAP2 : Short Oligonucleotide Analysis Package 2
SOAPaligner/soap2 is a member of the SOAP (Short Oligonucleotide Analysis Package)...It is an updated version of SOAP software for short oligonucleotide alignment. Th...ast and accurate alignment for huge amounts of short reads generated by Illumina/S...2179 days ago
GenomeMapper: Simultaneous alignment of short reads against multiple genomes
GenomeMapper is a short read mapping tool designed for accurate read alignments. It quickly aligns millions of reads either with ungapped or gapped alignments. It can be used t...2177 days ago
WhatsHap: fast and accurate read-based phasing
...ing DNA sequencing reads, also called read-based phasing or haplotype assembly. It is especially suitable for long reads, but works also well with short reads. Features Very...2174 days ago
minimap2: A versatile pairwise aligner for genomic and spliced nucleotide sequences
...-ax map-ont ref.fa ont.fq.gz > aln.sam # Oxford Nanopore genomic reads ./minimap2 -ax sr ref.fa read1.fa read2.fa > aln.sam # short genomic paired-end reads ./m...2151 days ago
ReMILO: reference assisted misassembly detection algorithm using short and long reads.
...LO, a reference assisted misassembly detection algorithm that uses both short reads and PacBio SMRT long reads. ReMILO aligns the initial short reads to both the contigs and...2135 days ago
LSC :a long read error correction tool
...ady, Happy LSCing! Latest publication Kin Fai Au, Jason Underwood, Lawrence Lee and Wing Hung Wong Improving PacBio Long Read Accuracy by Short Read Alignment [Manuscri...2108 days ago
PureCN: copy number calling and SNV classification using targeted short read sequencing
...(SNVs) by somatic status and clonality. PureCN is designed for targeted short read sequencing data, integra...ldquo;PureCN: Copy number calling and SNV classification using targeted short read sequencing.” ...2101 days ago
FMLRC: a long-read error correction tool using the multi-string Burrows Wheeler Transform
...ction of long read sequencing using the BWT and FM-index of short-read sequencing data. Given a BWT of the short-read sequencing data, FMLRC w...r k-mer size and instead uses a two pass method with both a short "k-mer" and a longer "K-mer"....2100 days ago
2095 days ago