Results for "Simple way"
Bookmarks
...or by mapping a data against consensus sequences of other assemblies (a simple mapping). The MIRA acronym s...ogram pretty well does what its acronym says (well, most of the time anyway). It is the Swiss army knife...2952 days ago
YASS :: genomic similarity search tool
YASS is a genomic similarity search tool, for nucleic (DNA/RNA) sequences in fasta or plain text format (it produces...seeds that enable to search more fuzzy repeats, as non-coding DNA/RNA. Another sim...2926 days ago
RCircos: an R package for Circos 2D track plots
RCircos package provides a simple and flexible way to make Circos 2D track plots with R and could be easily integrated into other R data processing and graphic manipulation pipelines for pre...2908 days ago
VAGUE:Velvet Assembler Graphical Front End
VAGUE is a vague acronym for "Velvet Assembler Graphical Front End", which means it is a GUI for the Velvet de novo...of Velvet can be complicated for beginners to use, but VAGUE makes it clear and sim...2628 days ago
BLAST Ring Image Generator (BRIG)
BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large n.... BRIG will perform all BLAST comparisons and file parsing automatically via a sim...2775 days ago
- ...sequences, along with any associated variant calls in the sample. This way Ribbon shows patterns in alignme...ntary Note 2. Figure 1b shows another complex event in this sample made simple in Ribbon: the translocati...
2754 days ago
- quickmerge uses a simple concept to improve contiguity of genome assemblies based on long molecule sequences, often with dramatic outcomes. The program uses informati...
2695 days ago
- YAHA, a fast and flexible hash-based aligner. YAHA is as fast and accurate as BWA-SW at finding the single best alig...Unlike other aligners that report all, or one, alignment per query, or that use sim...
2663 days ago
Many-Core Engine (MCE) for Perl example
MCE spawns a pool of workers and therefore does not fork a new process per each element of data. Instead, MCE follow...thods and output iterators for preserving output order. MCE::Mutex Provides a sim...2652 days ago
- Simple ideogram plotting and annotation in R. Basic usage: Rscript Ideoplot.R --heatmap hm.bed --annotate annotations.bed --out ideogram.pdf -or- Rscript Ideoplot.R...
2639 days ago
