2623 days ago
SeqMule: Automated human exome/genome variants detection
SeqMule takes single-end or paird-end FASTQ or BAM files, generates a script consisting of more than 10 popular alignment, analysis tools and runs the script line by line. Use...2617 days ago
2593 days ago
2560 days ago
CLA: Contig-Layout-Authenticator
...with other widely-used scaffolding and ordering tools using both simulated and real sequence datasets. CLA is a user friendly tool that requires a single command line input to generat...2558 days ago
Pollux: platform independent error correction of single and mixed genomes
...eral-purpose error corrector that corrects errors introduced by Illumina, Ion Torrent, and Roche 454 sequencing technologies and can be applied to single- or mixed-genome data. In add...2544 days ago
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
...GRASS offers a mixed-integer programming formulation of the contig scaffolding problem, which combines contig order, distance and orientation in a single optimization objective. The r...2540 days ago
Genome Annotation Transfer Utility (GATU)
...ome (the annotated strain) to the new sequence (the unannotated strain). The goal is to annotate the majority of the new genome’s genes in a single step. ORFs present in the tar...2534 days ago
eQuant : energy-based quality assessment of protein
...tein structures.eQuant is a service for structure quality assessment of single proteins, which utilizes a co...lated as well as the reliability of individual residues. You can submit single PDB files or archives contain...2507 days ago
2506 days ago