CLA: Contig-Layout-Authenticator
To improve upon the shortcomings associated with the construction of draft genomes with Illumina paired-end sequenci...mulated and real sequence datasets. CLA is a user friendly tool that requires a sing...2567 days ago
Pollux: platform independent error correction of single and mixed genomes
Pollux: General-purpose error corrector that corrects errors introduced by Illumina, Ion Torrent, and Roche 454 sequencing technologies and can be applied to sing...2553 days ago
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
GRASS (GeneRic ASsembly Scaffolder)-a novel algorithm for scaffolding second-generation sequencing assemblies capabl...scaffolding problem, which combines contig order, distance and orientation in a sing...2549 days ago
Genome Annotation Transfer Utility (GATU)
Genome Annotation Transfer Utility (GATU) was designed to facilitate quick, efficient annotation of similar genomes...ain). The goal is to annotate the majority of the new genome’s genes in a sing...2543 days ago
eQuant : energy-based quality assessment of protein
Protein structures are of varying quality. Especially, in-silico modeled struc...nt is a service for structure quality assessment of single proteins, which utilizes a co...reliability of individual residues. You can submit sing...2517 days ago
2516 days ago
GeneProf: analysis of high-throughput sequencing experiment
GeneProf is a web-based, graphical software suite that allows users to analyse data pr...ped at the Centre for Regenerative Medicine / Institute for Stem Cell Research, University of...2506 days ago
slacTree: SVG Large Annotated Circular Tree drawing
A simple, extensible, Perl script for producing figures of large phylogenetic trees. While there are many other t...ircular trees with more than 1000 taxa with custom annotations Because it is a sing...2508 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-map...iniasm assembles 9 out of 12 PacBio datasets and 3 out of 4 ONT datasets into a sing...2361 days ago
INC-Seq: accurate single molecule reads using nanopore sequencing
INC-Seq reads enabled accurate species-level classification, identification of species at 0.1 % abundance and robust quantification of relative abundances, providing a cheap and effective approach for pathogen detection and microbiome profiling on the MinION system.2361 days ago