Results for "Single cell sequencing"
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methylKit is an R package for DNA methylation...annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and its varian...It can also handle whole-genome bisulfite sequencing data if proper input format i...2896 days ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to vis...onal Biology special issue : Quality assessment and control of high-throughput sequencing data). It contains bash/perl...
2886 days ago
- The Genome Assembly Evaluation Metrics and Reporting (GAEMR) packag...integrated modules. These modules can be executed as a sing...types to Binary Alignment Map (BAM) format, allowing a single inp...
2885 days ago
- LoRMA is a tool for correcting sequencing errors in long reads such those produced by Pacific Biosciences sequencing machines. Publication: L....
2169 days ago
CovCal: Coverage / Read Count Calculator
Coverage / Read Count Calculator Calculate how much sequencing you need to hit a target depth of coverage (or vice versa). Instructions: set the read length/configuration and genome size, then s...2169 days ago
CNIDARIA: fast, reference-free phylogenomic clustering
Motivation: Identification of biological specimens is a major requirement for a range of applications. Reference-free methods analyse unprocessed sequencing data without relying on prior...2883 days ago
- SAMtools: Primer / Tutorial by Ethan Cerami, Ph.D.keywords: samtools, next-gen, next-generation, sequencing, bowtie, sam, bam, primer, tu...
2876 days ago
- Reads simulator Wgsim is a small tool for simulating sequence reads fr...INDEL) polymorphisms, and simulate reads with uniform substitution sequencing errors. It does not generate INDEL sequencing errors, but this can be partl...
2876 days ago
- _A5-miseq_ is a pipeline for assembling DNA sequence data generated on the Illumina sequencing platform. This README will ta...
2820 days ago
- Kaiju is a program for the taxonomic classification of metagenomic high-throughput sequencing reads. Each read is directly...
2872 days ago
