Results for "Single cell sequencing"
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Murasaki is an anchor alignment program that is exteremely fast (17 CPU hours for whole...rbitrarily parallelizable across multiple nodes using MPI) memory efficient. (Even a single nod...2788 days ago
- The accurate description and annotation of structural variants can be complex. This...own to the actual base pair positions. Furthermore, multiple rearrangements in a single are...
2787 days ago
- Development of cancer is driven by somatic alterations, including numerical and str...by array-Comparative Genomic Hybridization (CGH) or by (low-pass) whole genome sequencing (WGS). First, ‘GeneBreak’ col...
2168 days ago
- The MIRO (the miRNA omics) pipeline is a flexible and p...nerall short RNA) expression using short-read deep sequencing data. In its present implemen...the analysis of reads generated with the Illumina sequencing platform. MIRO allows to prep...
2784 days ago
- Metagenomics sequencing projects collect samples of DNA from uncharact...ical diversity present in a sample. The newest sequencing technologies have simultaneously made metagenomics easier, by making the sequencing process faster, and more diff...
2779 days ago
- ...in the SK-BR-3 breast cancer cell line linking the genes CYTH1...nscriptome previously, genome sequencing did not identify a dire...n these two genes. After SMRT sequencing, Ribbon shows that there are...e gene fusions of this cancer cell line are investigated in Supplement...
2768 days ago
- Background: Transcriptomics, metabolomics, metagenomics, and other various next-generation sequencing (-omics) fields are kno...gh-dimensional numerical data as a colored grid of cells, efficiency and speed have often p...
2768 days ago
- The eFORGE tool provides a method to view the tissue specific regulatory component of...ed background DMPs. It assesses enrichment on a per cell type basis, since functional elements are differentially active in different cell types...
2761 days ago
- ART is a set of simulation tools to generate synthetic next-generation sequencing reads. ART simulates sequencing reads by mimicking real seque...rized from large recalibrated sequencing data. ART can also simulate r...or commercial next-generation sequencing platforms: Illumina's Solexa,...
2755 days ago
- ...nces from high-throughput DNA sequencing reads. Targeted bait capture...e starts with high-throughput sequencing reads (for example from Illum...ative paralogs, and calculate sequencing depth. For more information,&...n separately for each sample (single or paired-end sequence reads). Wh...
2754 days ago
