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Results for "Sort"

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• • Rahul Nayak@rahul

  

  Sort FASTA sequence by length: cat f1.fasta| awk '{if($0 ~ /^>/){printf "%st", $0}else{print length($0)"t"$0}}'| sort -k2n,2| awk '{print $1"n"$3}' > sequence.fasta #Sort #Fasta #Trick #Onliner

  Tags: Sort, Fasta, Trick, Onliner

  3193 days ago

• • Jit@jit.aber

  

  Check if BAM file is sorted or not use: for F in `find . -name "*.bam"`; do echo $F; samtools index ${F} ; done #Sort #BAM #Trick

  Tags: Sort, BAM, Trick

  2873 days ago

• • Jit@jit.aber

  

  Sort and get the best first of duplicated lines $ sort -k3rn file | sort -u -k1,1 #Sort #Duplicated #Value

  Tags: Sort, Duplicated, Value

  1388 days ago

• • Hardeep Kaur@hardeep

  

  sort -k2 -n genome.fa #Sort #Column2 #Bash

  Tags: Sort, Column2, Bash

  2120 days ago

• • Jit@jit.aber

  

  sort the string which combined with string + numeric using bash script. $ sort -V #Sort #sort #number #string

  Tags: Sort, sort, number, string

  1203 days ago

• • Jit@jit.aber

  

  Sort a file with column 2: sort -g -k 2,2 allPacbio.fa.fai > sorted.fai #sort #file #column

  Tags: sort, file, column

  2373 days ago