GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
GraphMap is a novel mapper targeted at aligning long, error-prone third-generation sequencing data.It is des...ensitivity and accuracy, and also presents a significant improvement over the state-of-t...3237 days ago
RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute and the Hebrew University of Jerusalem, represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data. T...2978 days ago
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CISA: Contig Integrator for Sequence Assembly
A plethora of algorithmic assemblers have been proposed for the de novo assembly of ge...of high accuracy. In this study, we employ various state-of-the-art assemblers to gene...acy, compared with the assemblies generated by the state-of-t...2710 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is...aeal) gene finding program developed at Oak Ridge National Laboratory and the University of Tennessee. Key features of...2697 days ago