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Bioinformatician’s Pocket Reference !!
...ormaticians work! Learning a new programming language for days feels so much of fun that making 5 minute discussion with neighbours (unless under special circumstances!) in our own mo...3627 days ago
mrFAST: Micro Read Fast Alignment Search Tool
mrFAST is a read mapper that is designed to map short reads to reference genome with a special emphasis on the discovery of structural variation and segmental duplications. mrFAST map...2940 days ago
- ...tin Jones, Georgios Koutsovoulos, Michael Clarke, Mark Blaxter(submitted 2013-10-01 to Frontiers in Bioinformatics and Computational Biology special issue : Quality assessment an...
2891 days ago
YASRA: Reference based assembler
...genome being sequenced. Mapping reads to reference genomes makes use of LASTZ (Harris et al), a pairwise sequence aligner compatible with BLASTZ. Special scoring sets were derived to...2630 days ago
chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
...romosome regions of any living organism allowing users to map chromosome elements (like genes, SNPs etc.) on the chromosome plot. It introduces a special plot viz. the "chromosome hea...1859 days ago
FinisherSC:a repeat-aware tool for upgrading de novo assembly using long reads
...hreads to run FinisherSC. python finisherSC.py -par 20 destinedFolder mummerPath Sometimes, if the names of raw reads and contigs consists of special characters/formats, FinisherS...2094 days ago
visNetwork: an R package for network visualization, using vis.js javascript library
...sp;shiny, R Markdown documents, and RStudio viewer The package proposes all the features available in vis.js API, and even more with special features for R : easy to u...1951 days ago
- ...nbsp;searches, respectively, against a nonredundant set of KEGG GENES. Annotate Sequence in KEGG Mapper and Pathogen Checker in KEGG Pathogen are special interfaces to the BlastKOALA...
1979 days ago
plumber:An R package that converts your existing R code to a web API
plumber allows you to create a REST API by merely decorating your existing R source code with special comments. Take a look at an example. # plumber.R #* Echo back the input #* @...1888 days ago
Flye: Fast and accurate de novo assembler for single molecule sequencing reads
...e assemblies. The package represents a complete pipeline: it takes raw PB / ONT reads as input and outputs polished contigs. Flye also includes a special mode for metagenome assembly.1868 days ago
