Results for "Structure Preduction"
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HybPiper was designed for targeted sequence capture, in which DNA sequencing libraries are enriched for gene regions..., and some of the later scripts take advantage of this predictable directory structure.2740 days ago
- v0.0 by Glenn Hickey (hickey@soe.ucsc.edu) Progressive Cactus is a whole-genome alignment package. Requirements...In order to run the included tools (ex hal2maf) in the submodules/ directory structure,...
2666 days ago
fineSTRUCTURE v2 & GLOBETROTTER
Software available at this site FineSTRUCTURE version 2, a pipeline for running ChromoPainter and FineSTRUCTURE for population inference. A GUI is a...wnload from the Downloads page. FineSTRUCTURE R scripts, a facility for exp...terpret the results of ADMIXTURE and STRUCTURE-...2639 days ago
- The hive plot is a rational visualization method for drawing networks. Nodes are mapped to and positioned...ral and tunable and useful as a starting point in visually exploring network structure....
2636 days ago
- The process of finishing a genome and moving it from a draft stage (the result of sequencing and...hingContigs from a shotgun assembly are typically linked together in a graph structure...
2542 days ago
eQuant : energy-based quality assessment of protein
Protein structures are of varying quality. Especially, in-silico modeled structures are prone to contain serious errors, which limit the usefulness and reliability of these particular protein structures...2507 days ago
Genomicus: genome browser that enables users to navigate in genomes in several dimensions
Genomicus is a genome browser that enables users to navigate in genomes in several dimensions: linearly along chromo...omes. Moreover, Genomicus stores and displays the predicted ancestral genome structure...2360 days ago
CHSMiner: a GUI tool to identify chromosomal homologous segments
Background The identification of chromosomal homologous segments (CHS) within and between genomes is essential fo...be useful for both experimentalists and bioinformaticians interested in the structure...2360 days ago
phyloXML: XML for evolutionary biology and comparative genomics
phyloXML (example) is an XML language designed to describe phylogenetic trees (or networks) and assoc...oXML, extensibility as well as domain specific applications are ensured. The structure...2350 days ago
Delta: a new Web-based 3D genome visualization and analysis platform
Delta is an integrative visualization and analysis platform to facilitate visually a...model which represents the plausible consensus 3D structure of the genome. Deltafeat...ances the integration of genome topology/physical structure...2329 days ago
