Understanding reads mapping and flags !
...tive” alignment, and the others are called “supplementary” and are distinguished by the supplementary alignment flag. Chimeric rea...lighment, for other alignment positions, we called them supplementary alignment. It seems that GAT...1852 days ago
CNIDARIA: fast, reference-free phylogenomic clustering
...aria is written in C++ and Python and is available at http://www.ab.wur.nl/cnidaria. Contact: Saulo Aflitos - sauloal@gmail.com Supplementary information: Supplementary data are available at Bioinfo...2894 days ago
2868 days ago
Understanding reads mapping and flags !
Linear Alignment: An alignment of a read to a single reference sequence that may include insertions, deletions, skips and clipping, but may not include direction changes (i.e. one portion of the alignment on forward strand and another portion of alignment on reverse strand). ...Tags: Linear, Chimeric, Supplementary, Primary, Secondary, Alignments
1852 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
...c split read region. [10] -g --gap-split [INT] Minimum length of gap that causes a split-alignment. [100] -S --soft-clip Use soft clipping for supplementary alignment. [false] -C --comme...2137 days ago