Results for "Syntenic Regions"
Bookmarks
BLAST Ring Image Generator (BRIG)
BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular...ce data. BRIG also accepts SAM-formatted read-mapping files enabling genomic regions present in unassembled sequen...2776 days ago
- Strudel is our graphical tool for visualizing genetic and physical maps of genomes for comparative purposes. The app...ent levels of resolution, from entire maps to individual markers, and explore synteni...
2776 days ago
- HybPiper was designed for targeted sequence capture, in which DNA sequencing libraries are enriched for gene regions of interest, especially for p...er the main pipeline, to also extract the intronic regions flanking each exon, investiga...
2741 days ago
- EXCAVATOR2 is a collection of bash, R and Fortran scripts and codes that analyses Whol...g our method with the beneficial effect to identify novelCNVs in extra-exonic regions by having the full-genome CN...
2715 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
GAM-NGS (Genomic Assemblies Merger for Next Generation Sequ...f both. GAM-NGS does not rely on global alignment: regions of the two assemblies represe...mal resolution of local problematic regions.2696 days ago
- quickmerge uses a simple concept to improve contiguity of genome assemblies based on l...ve because illumina short reads are not typically considered to cover genomic regions which PacBio long reads canno...
2696 days ago
- If genomes were completely random sequences in a statistica...contrast, real genomes often have long repetitive regions, and they are hard to assembl...ally proposed to handle the assembly of repetitive regions better. More at http://...
2695 days ago
- MCscan is a computer program that can simultaneously scan multiple genomes to identify homologous chromosomal regions and subsequently align these regions using genes as anchors. This...
2693 days ago
- Cgaln (Coarse grained alignment) is a program designed to a...can explore genomic rearrangements and reduce the regions to be analyzed in the next st...s devoted to detailed alignment within the limited regions found in the first stage. The...
2631 days ago
GenomeRing: alignment visualization based on SuperGenome coordinates
The number of completely sequenced genomes is continuously rising, allowing for compar...browsers or by using a circular approach, where relationships between genomic regions are indicated by arcs. Both m...2666 days ago
