Results for "Syntenic Regions"
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slacTree: SVG Large Annotated Circular Tree drawing
A simple, extensible, Perl script for producing figures of large phylogenetic trees....t allowing for very small representations of entire trees or highly magnified regions with unlimited resolution Ci...2500 days ago
MGRA: Breakpoint graphs and ancestral genome reconstructions
MGRA (Multiple Genome Rearrangements and Ancestors) is a tool for reconstruction of an...ely or partially, in the latter case MGRA can reconstruct conserved ancestral regions (CARs) of the ancestral genom...2478 days ago
- Typically in comparative genomics, we can identify anchors, chain them into syntenic blocks and interpret these blocks as derived from a common descent. However, when comparing two genomes un...
2472 days ago
ACANA: An accurate and consistent alignment tool for DNA sequences
ACANA is an accurate and consistent alignment tool for DNA...equences that share only some moderately conserved regions and/or have a high frequency...algorithms in searching for evolutionarily related regions of sequences in order to achi...2344 days ago
Mugsy: multiple whole genome alignment tool
Mugsy is a multiple whole genome aligner. Mugsy uses Nucmer for pairwise alignment, a custom graph based segmentation procedure for identifying collinear regions, and the segment-based progre...2342 days ago
Alien_Hunter : prediction of putative Horizontal Gene Transfer (HGT) events
Alien_hunter is an application for the prediction of putative Horizontal Gene Transfer...on framework, to optimize the localization of the boundaries of the predicted regions. The predictions (embl format...2312 days ago
Dot, an interactive viewer for genome-genome comparison
Dot, an interactive dot plot viewer that allows genome scientists to visualize genome-...tes file with an index that enables Dot to read in more alignments in certain regions on demand. Dot, an interacti...2305 days ago
G-compass: a comparative genome browser
G-compass (http://www.h-invitational.jp/g-compass/) is a comparative genome browser. It visualizes evolutionarily conserved genomic regions between human and other 12 ve...2217 days ago
Gblocks: eliminates poorly aligned positions and divergent regions of a DNA or protein alignment
Gblocks eliminates poorly aligned positions and divergent regions of a DNA or protein alignment so that it becomes more suitable for phylogenetic analysis. This server implements the most importa...2166 days ago
- PERGA - Paired End Reads Guided Assembler PERGA is a novel sequence reads guided de...chnology, and it also try to separate the different repeats of nearby genomic regions to make the assembly result m...
2163 days ago
