Results for "TE"
Top-level pages
...runs some of the largest compute clusters in the world. SLURM...y ways to most other queue systems. You write a batch script t...ed to other job management systems: Kill and Requeue SLURM&...cal information about the cluster. This information can be que...2915 days ago
Tools for Searching Repeats And Palindromic Sequences
...dox ). These sequences were later characterized and placed into five categories: Simple Repeats - Dupl...nother region of the genome.Interspersed RepeatsProcessed Pseu...ic palindromes it does not matter whether the nucleic acid str...one strand would be complimented by a 3' CTTAAG 5' strand. In...2212 days ago
- ...(old Illumina) paired files interleaved files It is multithre...at conversion. Reformat autodetects formats based on file exte.../2 suffix to read names GC-content filtering Length-filtering...overrides interleaving autodetection, to ensure reads are tre...
2715 days ago
- ...eet File System ls — list items in current directory &...nbsp; ls -F — list all items in current directory and sh...t machine date — show the current date...; secure copy a file from remote server to the dir directory o...
2875 days ago
Tool: Gene Set Clustering based on Functional annotation (GeneSCF)
...----------- Gene Set Clustering based on Functional annot...serves as command line tool for clustering the list of genes given b...ples to download database as simple text file using GeneSCF "prepare...sp; GeneSCF only works on Linux system, it has been successfully te...2873 days ago
- ...EnsEMBL GTF (Ex: https://gist.githubusercontent.com/santhilalsubhash/1e7cca...e.GTF) file to annotation table format. It generated two files1) Transcript wise...about genes (Ex: https://gist.githubusercontent.com/santhilalsubhash/c92006...
2107 days ago
- ...CIGAR string of 5M2I63M indicates that the first 5 base pairs...chia coli 536. FASTQ Format: text format for storing raw sequ...a Phred Q score of 10 translates to probability (P) = 10-10/1...nces at once. DeepSequencing Techniques of nucleotide sequenc...
2870 days ago
Genome Assembly Tools and Software - PART1 !!
...ds is usually highly memory-intensive, only a few assemblers, best suited for your assembly. For the s...on of reference (or close related reference) genome and aligne...pilon v1.16 – Automated Assembly Improvement pilo...scripts. Cufflinks then estimates the relative abundances of t...2687 days ago
Source Code and Pseudo Code !!
...dure for solving a problem in terms of the actions to be executed and the order in which those...erage to the total divided by ten Print the class average....printf (Appropriate message 1 and skip a line)...unctions: one per line, indented Called by: List of fun...2660 days ago
Perl Special Vars Quick Reference
...variable. @_ Subroutine parameters. $a$b sort compa...ns for RE optimizations for large alternations. Encoding $...e code to Unicode. ${^OPEN} Internal use: \0 separated Input /...wait() or waitpid(), or from the system() operator. ID's and Pr...2645 days ago
