Awk for Bioinformatician and computational biologist
...r, for example, if we want to print $1 three times (here we are using printf instead of print as the former doesn't put end-of-line character), $ awk '{printf $1"\t"}{printf $1"\t"}{print...2278 days ago
Computational resources for TE discovery and TE detection
...PILER http://www.drive5.com/piler/ PLOTREP http://repeats.abc.hu/cgi-bin/plotrep.pl RepBase http://www.girinst.org/ RepeatFinder http://cbcb.umd.edu/software/RepeatFinder/ RepeatGluer http://nb...2273 days ago
Python learning resources for bioinformatics and computational biologist !
...The Coder's Apprentice: Learning Programming with Python 3 - Pieter Spronck (PDF) (3.x) The Definitive Guide to Jython, Python for the Java Platform - Josh Juneau, Jim Ba...2254 days ago
Some useful Bioinformatics links
...n Optimization OnLine (COOL): a web-based multi-objective optimization platform for synthetic gene design...dot-plots%26catid%3D52:cat_coding_algorithms_dot-plots%26Itemid%3D76 RepeatFinder Home Page http://www.cb...2240 days ago
Installing Bio::SCF perl module
....Checking whether to use vs[n]printf() or s[n]printf()... using vs[n]printf().Chec...-I../read -I../alf -I../abi -I../ctf -I../ztr -I../plain -I../scf...-I../read -I../alf -I../abi -I../ctf -I../ztr -I../plain -I../scf...-I../read -I../alf -I../abi -I../ctf -I../ztr -I../plain -I../scf...2217 days ago
Tools to Predict the Impact of Missense Variants !
.... PolyPhen‐2 (PP2)“Predicts possible impact of an amino acid substitution on the structure and function of a human protein using straightforward physical and comparativ...2202 days ago
Binding Site Prediction in Protein !
The interaction between proteins and other molecules is fundamental to all biological functions. In this section we include tools that can assist in prediction of int...2201 days ago
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Understanding BLASTn output format 6 !
...lastn -query genes.ffn -subject genome.fna -outfmt 6 BLASTn tabular output fo...your own output format by adding the option -outfmt, as for example: -outfmt ...sp Query Coverage Per HSPdefault values are:-outfmt "6 qseqid sseqid pident len...2137 days ago
Bioinformatics Services / CRO Services
...solutions to chemical and life science research and industry. We provide our customers with A seamless model of wide expertise and comprehensive platforms. Our Value is to take our...1641 days ago