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Commercial and public next-gen-seq (NGS) software
...ory. Uses a Burrows-Wheeler-Transformed (BWT) index. Link to discussion thread here. Written by Ben Langmead...; http://dir.nhlbi.nih.gov/papers/lmi/epigenomes/sissrs/ See also this thread for ChIP-Seq, until I get tim...3531 days ago
Software packages for next gen sequence analysis
...ory. Uses a Burrows-Wheeler-Transformed (BWT) index. Link to discussion thread here. Written by Ben Langmead...Sequence Reads. BED file input. Raja Jothi @ NIH. Perl. **See also this thread for ChIP-Seq, until I get tim...3254 days ago
- ...ger) ascii-64 (old Illumina) paired files interleaved files It is multithreaded and can process data at ove...with a text editor. If you have any questions, please post them in this thread. For people using a non-bash...
2726 days ago
Ancestral sequence reconstruction steps !
...st following steps? 1- Alignments "Mafft - http://mafft.cbrc.jp/alignment/software/source.html" mafft --maxiterate 1000 --reorder --thread 24 --genafpair Dataset.fasta...2191 days ago
LINKS scaffolder bloomfilter setting !
...oomFilter_wrap.cxx -I/home/urbe/anaconda3/lib/perl5/5.22.0/x86_64-linux-thread-multi/CORE/ -fPIC -Dbool=char...oomFilter_wrap.cxx -I/home/urbe/anaconda3/lib/perl5/5.22.0/x86_64-linux-thread-multi/CORE/ -fPIC -Dbool=char...2163 days ago
