Results for "Tools"
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SeqMule: Automated human exome/genome variants detection
SeqMule takes single-end or paird-end FASTQ or BAM files, generates a script consisting of more than 10 popular alignment, analysis tools and runs the script line by line. Users can...2609 days ago
Pacbio Long Reads Compatible Software and Tools
The following software packages are known to be compatible with PacBio® data, in addition to PacBio's own SMRT® Analysis suite. All packages are believed to be...2601 days ago
- ...ata to be explored with zooming, multi-layered pie charts. Krona charts can be created using an Excel template or KronaTools, which includes support for several bioinformatics tools and raw data formats. The int...
2595 days ago
gbtools: Interactive Visualization of Metagenome Bins in R
We have developed gbtools, a software package that allows users to visuali...m plots, or be imported from third-party binning tools and overlaid onto plots, such...ifferent methods can be compared side-by-side. gbtools reports summary statistics of...2590 days ago
- Lifemap is an interactive tool to explore the WHOLE NCBI TAXONOMY. The concept used in Lifemap is similar to the one used in cartography with tools like Google Maps© or Open Str...
2575 days ago
- DIAMOND is a sequence aligner for protein and translated DNA searches and functions as a drop-in replacement for the NCBI BLAST software tools. It is suitable for protein-protein sea...
2559 days ago
Enrichr: a comprehensive gene set enrichment analysis
...ment analysis is a popular method for analyzing gene sets generated by genome-wide experiments. Here we present a significant update to one of the tools in this domain called Enrichr...2558 days ago
CLA: Contig-Layout-Authenticator
...ng and scaffolding of large repetitive contigs. The tool has been validated and compared favorably with other widely-used scaffolding and ordering tools using both simulated and real...2550 days ago
- This tutorial will serve as an example of how to use free and open-source genome assembly and secondary scaffolding tools to generate high quality assemblies of bacterial sequen...
2550 days ago
- ...e-pair data to augment assemblies and direct finishing experiments. The tools developed in our lab have bee...al., in submission). The executables (as well as source code) for these tools are freely available here:...
2535 days ago
