AVID: A Global Alignment Program
...erformed a quantitative comparison of AVID with other popular alignment tools. To this end, we have establi...son. These formats and methods should be useful for future studies. The tools we have developed for the ali...2531 days ago
Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
...ets from current sequencing technologies such as Sanger, 454, Illumina. These simulated datasets can be used to test the accuracy of bioinformatic tools under specific hypothesis, e....2531 days ago
Synteny Portal: a web-based application portal for synteny block analysis
...serve as a highly valuable tool that will enable biologists to easily perform comparative genomics studies by compensating limitations of existing tools. Synteny Portal is freely ava...2531 days ago
BEDOPS v2.4.26: high-performance genomic feature operations
BEDOPS v2.4.26 is a suite of tools to address common questions raised in genomic studies — mostly with regard to overlap and proximity relationships between data sets. It aims...2512 days ago
2495 days ago
DIYA: a bacterial annotation pipeline for any genomics lab
DIY Genomics is an open source bioinformatics consortium intended to bring a collection of tools and libraries into the hands of small scale genomics labs for the process of sequence assembly and annotation. Projects include DIYA, MGAP, CRISPR, and DIYGV http://gmod.org/wiki/Diya2494 days ago
Mulan: MUltiple sequence Local AligNment and conservation visualization tool
...of evolutionary sequence rearrangements (such as inversions and reshuffling) in any of the species. It combines refine and tba tools to align either "draft" or "f...2474 days ago
Web Apollo: a web-based genomic annotation editing platform
...owing from current advances in sequencing technology is that there are more and more researchers sequencing new genomes. These researchers require tools to describe the functional fe...2466 days ago
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
...k of DFAST allows users to customize the annotation workflow easily and will also facilitate extensions for new functions and incorporation of new tools in the future. Availability...2357 days ago
poRe: an R package for the visualization and analysis of nanopore sequencing data
...p, the MinION has huge potential applications. To enable these applications, the bioinformatics community will need to design and build a suite of tools specifically for MinION data....2348 days ago