Results for "Tools"
Bio-Scripts
Install Parrot Virtual Machine !
....................yes. auto::perldoc - Is perldoc installed.................................no. auto::coverage - Are coverage analysis tools installed...Negative repeat c...1531 days ago
Long reads mapper bash script !
...visualization ready !" #Location of the tools samtools=/home/urbe/anaconda3/bin/samt.../urbe/anaconda3/bin/bwa ngmlrLoc=/home/urbe/Tools/ngmlr/bin/ngmlr-0.2.3/ngmlr...etting files ready for visualization !" $samtools view -Sb $fileName.out.sam |...2116 days ago
- ➜ BorisTrinityAssembly /home/urbe/Tools/transrate-1.0.3-linux-x86_64/transrate _...example commands with explanations ➜ BorisTrinityAssembly /home/urbe/Tools/transrate-1.0.3-linux-x86_64/...
2117 days ago
Installing Porechop on Ubuntu !
➜ Tools git:(master) ✗ git clone https://github.com/rrwick/Porechop.git Cloning into.... Resolving deltas: 100% (869/869), done. Checking connectivity... done. ➜ Tools git:(master) ✗ cd Porechop...2099 days ago
- ...ng facheck" echo "/home/urbe/Tools/Reapr_1.0.18/reapr facheck Wa...preprocess" echo "/home/urbe/Tools/Reapr_1.0.18/reapr preprocess...Running fcdrate" /home/urbe/Tools/Reapr_1.0.18/reapr fcdrate ....Running facheck" /home/urbe/Tools/Reapr_1.0.18/reapr facheck Wa...
2093 days ago
- ➜ Tools git:(master) ✗ git clone http...export SWEETPATH=/home/urbe/Tools/nextsv/aligners_and_callers/P...e been written to: /home/urbe/Tools/nextsv/aligners_and_callers/S...s-2.3.0/src/api/CMakeFiles/BamTools-static.dir/internal/bam/BamRa.../VCFPrinter.cpp.o /home/urbe/Tools/nextsv/aligners_and_callers/S...
2092 days ago
- ...Usage template for Spark tools (will NOT work on non-Spark t...Tools that process sequencing machi...rnal pileup to a reference Samtools mpileup CheckTerminatorB...Tools that analyze and manipulate F...
2069 days ago
- ...| 153 ++++++++++++++++++++--------------------- plugins/ubuntu/ubuntu.plugin.zsh | 2 +- plugins/urltools/urltools.plugin.zsh...
2068 days ago
Installing pb-assembly on Linux !
...MCL/14.137-foss-2016a cctools/5.2.3...SAMtools/1.3.1-foss-2016a HDF5/1.8.16...n@hmem00 ~]$ conda install samtools Fetching package metadata .....py27_1 conda-forge samtools 1.9...2028 days ago
- ...Leaving directory '/home/urbe/Tools/nupack3.0.6/nupack3.0.6/src/s...ntering directory '/home/urbe/Tools/nupack3.0.6/nupack3.0.6/src/t...Leaving directory '/home/urbe/Tools/nupack3.0.6/nupack3.0.6/src/t...Leaving directory '/home/urbe/Tools/nupack3.0.6/nupack3.0.6/src/t...
2020 days ago
