2713 days ago
2712 days ago
2710 days ago
Finding Patterns in Biological Sequences
...cal verification of such patterns. Finally we list publicly available tools and databases for pattern discovery. On-line supplement is available through http://genetics.uwaterloo.ca...2710 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
...under 5%. GC-Content Indifferent: Prodigal performs well even in high GC genomes, with over a 90% perfect match (5'+3') to the Pseudomonas aeruginosa curated annotations...2703 days ago
2673 days ago
Many-Core Engine (MCE) for Perl example
...4 add-on modules for use with MCE. MCE::Candy Provides a collection of sugar methods and output iterator...parallel implementation for chaining multiple maps and greps together through user_tasks and MCE::Queue. L...2670 days ago
iTOL: interactive Tree Of Life
...relli, et al., 2006. In addition to the precomputed trees, users can upload and display personal trees and data, using the 'Data upload' page or through a personal user account.2670 days ago
2667 days ago
ConPADE: Genome Assembly Ploidy Estimation from Next-Generation Sequencing Data
...ng and allele dosage estimation. Results for simulated and real datasets are discussed and provide evidence that ConPADE performs well as long as enough sequencing coverage is avail...2646 days ago