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FinisherSC: a repeat-aware and scalable tool for upgrading de novo assembly using long reads
FinisherSC, a repeat-aware and scalable tool for upgrading de novo assembly using long reads. Experiments with real data suggest that FinisherSC can provide longer and higher quality contigs than existing tools while maintaining high concordance.2637 days ago
- ...escribed in: Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomesMads Albertsen, Philip Hugenholtz, Adam Skarshewski, Gen...
2633 days ago
- ...cribed in: Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes Mads Albertsen, Philip Hugenholtz, Adam Skarshewski, Gen...
2622 days ago
- Samtools is a suite of programs for interacting with high-throughput sequencing data. It consists of three...ort indel sequence variantsHTSlibA C library for reading/writing high-throughput sequencing data Samtools...
2621 days ago
- ...t run the main script, snpgenie.pl, in a directory containing the necessary input files, and we take care of the rest! For the earlier version, see Hughes Lab Bioinformatics Resourc...
2606 days ago
- ...ling with non-model organisms acquire and process transcriptomic high-throughput sequencing data without h...steps from tissue collection, sample preparation and computer setup, through addressing biological questi...
2603 days ago
- High throughput sequencing (HTS) technologies are being applied to a wide range of important topics in biology. However, the analyses of non-model organisms, for which li...
2600 days ago
Metagenomics assembly workshop !!
Welcome to the one-day metagenomics assembly workshop. This tutorial will guide you through the typical steps of metagenome assembly and binning. The Tutorial Data Set F...2587 days ago
- ...o bundle a FASTA sequence and its quality data, but has recently become the de facto standard for storing the output of high-throughput sequencing instruments su...
2572 days ago
- ...terial genomes contain useful, albeit weak, phylogenetic signals. Even though tetra-nucleotide analysis (T...can be identified by TNA (Teeling et al., 2004). TNA is also fast enough that it can be used&nbs...
2571 days ago
