GeneProf: analysis of high-throughput sequencing experiment
...software suite that allows users to analyse data produced using high-throughput sequencing platforms (RNA...ke your life easy:Step-by-step workflows make it easy to analyse high-throughput data within a minimum of...2509 days ago
QuorUM: An Error Corrector for Illumina Reads
...make handling the data more complicated because they result in a large number of low-count erroneous k-mers in the reads. However, there is enough information in the reads to...2383 days ago
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq dataAfterQC can simply go through all fastq files in a folder and then output three folders: go...2378 days ago
poRe: an R package for the visualization and analysis of nanopore sequencing data
...Nanopore MinION device represents a unique sequencing technology. As a mobile sequencing device powered by the USB port of a laptop, the MinION has huge potential applications. To e...2368 days ago
IONiseR: tools for the quality assessment of data produced by Oxford Nanopore’s MinION sequencer
...t clear what will be most informative. We hope that IONiseR will provide a framework for visualisation of metrics that we haven’t thought of, and welcome feedback at...2368 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
...e long contigs from raw PacBio or ONT reads without error correction. It also shows that minimap can be used as a read overlapper, even though it is probably not as sensit...2364 days ago
RITA: Rapid identification of high-confidence taxonomic assignments for metagenomic data
...Beiko RG. Rapid identification of taxonomic assignments. Accepted to Nucleic Acids Research April 4, 2012. If you have any questions or bug reports, please let us know a...2364 days ago
Opera: An optimal genome scaffolding program
...May 2016, doi: 10.1186/s13059-016-0951-y.Song Gao, Wing-Kin Sung, Niranjan Nagarajan. Opera: reconstructing optimal genomic scaffolds with high-throughput paired-end sequences. Jou...2364 days ago
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
Monitoring the progress of DNA molecules through a membrane pore has been postulated as a method for sequencing DNA for several decades. Recently, a nanopore-based sequencing instru...2362 days ago
Computational Genomics: Applied Comparative Genomics
...g will be based on assignments, a midterm exam, class presentations, and a significant class project. There are no formal course prerequisites, although the course will require fami...2362 days ago