List of visualization tools for network biology
...Network visualization and analysis. Over 200 plugins [60] http://www.cytoscape...emsbiology.net/software/Dizzy/ DyCoNet Gephi plugin that can be used to identif...ration of data such as genomic context, high-throughput experiments, conserved co...2289 days ago
List of visualization tools for genome alignments
...variation and association with annotation information of a reference genome http://bioinformatics.zj.cn/magicviewer/ MapView Alignments of huge-scale single-end and pair-en...2285 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
...ash; force kill process id pid Permissions ls -l — list items in current directory and show permissions chmod ugo file — change permissions of file to ugo - u is the user's permission...2281 days ago
Awk for Bioinformatician and computational biologist
...ontig3 contig3 contig3contig4 contig4 contig4contig5 contig5 contig5 Although, we can also skip executing...mory with the syntax VARIABLE_NAME[KEY]=VALUE which you can later use through for (INDEX in VARIABLE_NAME)...2281 days ago
Computational resources for TE discovery and TE detection
...DER http://tlife.fudan.edu.cn/ltr_finder/ LTR_STRUC http://www.genetics.uga.edu/retrolab/data/LTR_Struc....ww.eecs.wsu.edu/~ananth/software.htm MAK http://wesslercluster.plantbio.uga.edu/mak06.html MaskerAid h...2275 days ago
Python learning resources for bioinformatics and computational biologist !
Python is a general-purpose language, which means it can be used to build just about anything, which will be made easy with the right tools/libraries. Professionally...2256 days ago
Some useful Bioinformatics links
...nce-free SNP detection: dealing with the data deluge https://www.ncbi.nlm.nih.go.../jts/nanocorrect video - how to install flash plugin on ubuntu 14.04 LTS 64-bit...eogram.html Circular Visualization in R http://zuguang.de/circlize_book/book/int...2242 days ago
Binding Site Prediction in Protein !
...of their volumes using Delaunay triangulation. Available also as PyMOL plugin Pocket-Finder Automatic i...hnique for the analysis of protein pockets. PocketPicker available as a plugin for PyMOL B...2203 days ago
2191 days ago
Learning Python Programming - a bioinformatician perspective !
...idely used in the big data, NGS, and bioinformatics. I will also walk through a real biological example wh...very well designed libraries for doing complex scientific computing (although we won't encounter them in t...2184 days ago