alienness : Rapid Detection of Candidate Horizontal Gene Transfers across the Tree of Life
...ion of genes between organisms by other means than parental to offspring inheritance. While it is prevalent in prokaryotes, HGT is less frequent in eukaryotes and particularly in Me...2243 days ago
EvidentialGene: tr2aacds, mRNA Transcript Assembly Software
EvidentialGene is a genome informatics project, "Evidence Directed Gene Construction for Eukaryotes", to construct high quality, accurate gene sets for animals and plants, developed...2186 days ago
2182 days ago
MCMCTREE: a phylogenetic program for Bayesian estimation of species divergence times
MCMCTREE is a phylogenetic program for Bayesian estimation of species divergence times using soft fossil constraints under various molecular clock models. This i...2161 days ago
EAGLER: a scaffolding tool for long reads.
...on the following operating systems: Mac OS X 10.11.1 Mac OS X 10.10.3 Ubuntu 14.04 LTS https://bib.irb.hr/datoteka/844447.Diplomski_2015_Luka_terbi.pdf...2159 days ago
CoLoRMap: Correcting Long Reads by Mapping short reads
Second generation sequencing technologies paved the way to an exceptional increase in the number of sequenced genomes, both prokaryotic and eukaryotic. However, short reads are diff...2082 days ago
funannotate: Eukaryotic Genome Annotation Pipeline
Funannotate is a genome prediction, annotation, and comparison software package. It was originally written to annotate fungal genomes (small eukaryotes ~ 30 Mb genomes), but has evo...2052 days ago
S-plot2: creates an interactive, two-dimensional heatmap of sequences
...ional heatmap capturing the similarities and dissimilarities in nucleotide usage between genomic sequences (partial or complete). In S-plot2, whole eukaryotic chromosomes and smalle...2043 days ago
S-plot2: Rapid Visual and Statistical Analysis of Genomic Sequences
...ional heatmap capturing the similarities and dissimilarities in nucleotide usage between genomic sequences (partial or complete). In S-plot2, whole eukaryotic chromosomes and smalle...2039 days ago
swgis v2.0 : a seqword genomic island sniffer
...version of the seqword genomic island sniffer. this version is specifically optimized for predicting genomic islands in eukaryotic genomes. swgis v2.0 was tested on several eukaryotic species of different l...2009 days ago