2580 days ago
2559 days ago
dbCAN: a web server and DataBase for automated Carbohydrate-active enzyme ANnotation
dbCAN is a web server and DataBase for automated Carbohydrate-active enzym...e family classification from CAZy database while it has the following unique feat...2535 days ago
Mulan: MUltiple sequence Local AligNment and conservation visualization tool
Mulan performs multiple (2 or more) sequence alignments with an efficient and rapid "full loca...terials for more details. This introduction is mainly focused on some novel features unique to t...2483 days ago
Meraculous: De Novo Genome Assembly with Short Paired-End Reads
We describe a new algorithm, meraculous, for whole genome assembly of deep paired-end short re...raversal of the subgraph of the k-mer (deBruijn) graph of oligonucleotides with unique high...2373 days ago
poRe: an R package for the visualization and analysis of nanopore sequencing data
Motivation: The Oxford Nanopore MinION device represents a unique sequencing technology. As a mobile sequencing device powered by the USB port of a laptop, the MinION has huge potent...2357 days ago
phyloXML: XML for evolutionary biology and comparative genomics
phyloXML (example) is an XML language designed to describe phylogenetic...ts for commonly used features, such as taxonomic information, gene names and identifiers, branch lengths, support valu...2351 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
PLAST is a fast, accurate and NGS scalable bank-to-bank sequence similarity search tool provid...sed heuristic comparison methods, such as the Blast suite of algorithms. Relying on unique soft...2349 days ago
2312 days ago
MGcV: the microbial genomic context viewer for comparative genome analysis
MGcV is an interactive web-based visalization tool tailored to facilitate small scale...interest in the input-box by selecting the type of identifier and pasting identifiers (one per line) or by us...2290 days ago