2632 days ago
Laj: viewing and manipulating the output from pairwise alignment programs
...inks to other web sites containing additional information about particular regions. The program is written in Java in order to provide a graphical user interface that is portable ac...2620 days ago
CONCOCT: Clustering cONtigs with COverage and ComposiTion
...ta in multiple samples and linkage data from paired end reads. Warning! This software is to be considered under development. Functionality and the user interface may still change si...2615 days ago
2611 days ago
gbtools: Interactive Visualization of Metagenome Bins in R
...veloped gbtools, a software package that allows users to visualize metagenomic ass...SSU rRNA genes, can be imported simultaneously; users can choose which annotations...luding marker gene completeness, and allows the user to add or subtract bins with...2595 days ago
CLA: Contig-Layout-Authenticator
...er, CLA also hints at probable misassemblies and contaminations, for the users to cross-check before constr...ordering tools using both simulated and real sequence datasets. CLA is a user friendly tool that requires a...2555 days ago
dbCAN: a web server and DataBase for automated Carbohydrate-active enzyme ANnotation
...Zy database and CAT: dbCAN provides the capability of automated and comprehensive CAZyme annotation of a given genome submitted by the user; dbCAN provides an explicitl...2531 days ago
CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
...T implementations is limited. CrocoBLAST combines the accuracy and general applicability of BLAST with computational efficiency, accessibility, and user experience, so that NGS data...2474 days ago
Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
...on making the detection of foreign DNA sequences an important part of analysis pipelines. Here we use Taxoblast, a simple pipeline with a graphical user interface, for the post-assem...2353 days ago
DRAWID: user-friendly Java software for chromosome measurements and idiogram drawing
"DRAWID has number of advantages including a user-friendly interactive interface, possibility for simultaneous chromosome and FISH/GISH/banding signal measurement and idiogram drawin...2349 days ago