2911 days ago
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2878 days ago
Maq: Mapping and Assembly with Quality
...ad page. Copy maq, maq.pl and maq_eval.pl to the $PATH or to the same directory. Simulate diploid reference and read sequences, map reads, call variants and evaluate the results in o...2860 days ago
BIMA V3: an aligner customized for mate pair library sequencing
Summary: Mate pair library sequencing is an effective and economical method for detecting genomic structural variants and chromosomal abnormalities. Unfortunately, the mapping and alig...2837 days ago
2789 days ago
2773 days ago
Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017
...fication of custom UMI protocols. “For liquid biopsies and low-grade FFPE samples, UMI support in DNA-Seq enables the detection of somatic variants at low concentrations. In RNA...2525 days ago
PBSuite: Software for Long-Read Sequencing Data from PacBio
...g reads (i.e., greater than 10,000 bp). PBHoney considers both intra-read discordance and soft-clipped tails of long reads to identify structural variants.2762 days ago
SeqMule: Automated human exome/genome variants detection
SeqMule takes single-end or paird-end FASTQ or BAM files, generates a script consisting of more than 10 popular alignment, analysis tools and runs the script line by lin...2754 days ago