Results for "Various bioinformatics software"
Top-level pages
Some useful Bioinformatics links
...rrangement breakpoint reads | Bioinformatics | Oxford Academic https://academic.oup.com/bioinformatics/article/30/18/2559/2475628 Re...tps://mafft.cbrc.jp/alignment/software/tips.html Omega | Overlap-graph de...lap Assembly of GEnomes | BMC Bioinformatics | Full Text https://bmcbioin...2260 days ago
- To remove all line ends (\n) from a Unix text file: sed ':a;N;$!ba;s/\n//g' filename.txt > newfilename_oneline.txt To get average for a column of numbers (here the...
2236 days ago
Ligand Docking Tools and Software !
Ligand docking referred to cases where small molecule (“ligand”) is being docke...ch larger macromolecule ("target"). The following is partial list of docking software, focusing on free (at least f...2221 days ago
Tools for Protein-Protein Docking !
Predicting the structure of protein–protein complexes using docking approaches is a difficult problem whose major challenges include identifying correct solutions,...2221 days ago
Gap filling or Contigs extensions tools !
...ion but it is not a very good software, it is useful only in some specific.... Take a look at the PRICE software from the DeRisi lab. Its meant to d...://www.sanger.ac.uk/resources/software/pagit/ In particular, tak...of several tools. https://bioinformaticsonline.com/search?q=scaf...2184 days ago
Learning Python Programming - a bioinformatician perspective !
Python Programming is a general purpose programming language that is open source, flexible, powerful and easy to use...tures and packages of python which are widely used in the big data, NGS, and bioinfor...2201 days ago
Ancestral sequence reconstruction steps !
Ancestral sequence reconstruction (ASR) – also known as ancestral gene/sequ...g steps? 1- Alignments "Mafft - http://mafft.cbrc.jp/alignment/software/source.html" mafft --maxiter...2198 days ago
My commonly used commands in Bioinformatics
FYI, I've found it useful to use MUMmer to extract the specific changes that Racon makes, so I can evaluate them individually: minimap -t 24 assembly.fasta long_reads.f...2129 days ago
List of non-commercial NGS genotype-calling software
Meaningful analysis of next-generation sequencing...alSFS/ Single-sample Aligned reads Software for SNP and genotype calling...andidate SNPs, genotype likelihoods Software for imputation, phasing and a...ulti-sample LD Genotype likelihoods Software for SNP and genotype calling,...2115 days ago
Parallel Processing with Perl !
Here is a small tutorial on how to make best use of multiple processors for bioinformatics analysis. One best way is using perl threads and forks. Knowing...ld be really useful before reading this tutorial. Many times in bioinfor...2099 days ago
