BIMA V3: an aligner customized for mate pair library sequencing
Summary: Mate pair library sequencing is an effective and economical method for detec...oints within reads increases mapping and alignment complexity. We describe an algorithm that is up to 20 times faster...2707 days ago
1979 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaea...2693 days ago
2667 days ago
FSA: Fast Statistical Alignment
FSA is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning homologous pr...reds or even thousands of sequences using a randomized inference algorithm to reduce the computational c...2653 days ago
DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
The DAGchainer software computes chains of syntenic genes found within complete genom...aximally scoring chains of ordered gene pairs are computed and reported. This algorithm can be used to mine large evo...2642 days ago
2625 days ago
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
GRASS (GeneRic ASsembly Scaffolder)-a novel algorithm for scaffolding second-generation sequencing assemblies capable of...olders using Illumina paired reads of three bacterial genomes. Our algorithm constructs a comparable numbe...2547 days ago
GeneProf: analysis of high-throughput sequencing experiment
GeneProf is a web-based, graphical software suite that allows users to analyse data p...parent (cp. Tutorial 'Examining Public Next-Gen Data..'). Extensibility:Algorithm developers and computer progr...2504 days ago
MOSS: A System for Detecting Software Similarity
Moss (for a Measure Of Software Similarity) is an automat...4, Moss has been very effective in this role. The algorithm behind moss is a significant improvement over other cheating detection algorithms (at least, over those known...2347 days ago