Results for "Whole genome"
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Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a QC st...age plots (TAGC plots) to visualise the contents of genome assembly data sets as a QC st...2896 days ago
- The Genome Assembly Evaluation Metrics and Reporting (GAE...sembly composed of, how well those pieces accurately represent the genome sequenced, and how much of that genome is represented by those piece...
2895 days ago
CovCal: Coverage / Read Count Calculator
Coverage / Read Count Calculator Calculate how much sequ...Instructions: set the read length/configuration and genome size, then select what you wa... C = Coverage (X),L = Read length (bp), G = Haploid genome size (bp), and N = Number of...2179 days ago
- DarkHorse is a bioinformatic method for rapid, autom...ranking of phylogenetically atypical proteins on a genome-wide basis. It works by selec...te a lineage probability index (LPI) score for each genome protein. LPI scores are inve...
2887 days ago
- Horizontal gene transfer (HGT), the transfer of genetic m...crucial for genetic innovation and the evolution of genome architecture. Existing HGT de...cestral (vertically derived) genes in its recipient genome. Detecting HGT between closel...
2887 days ago
- Reads simulator Wgsim is a small tool for simulating sequence reads from a reference genome. It is able to simulate diploid genomes with SNPs and insertion/dele...
2886 days ago
- Recent studies of the human genome have indicated that regulatory elements (e.g. promoters and enhancers)...interactions between DNA regions, e.g., ChIA-PET and HiC, can generate genome-wide maps of interactions bet...
2882 days ago
- CSBB is a command line based bioinformatics suite to analyze biological data acquire...sks like performing upper-quantile normalization on expression data or convert genome wide gene expression to z-sco...
2880 days ago
Bioinformatics tools and software
...ric sequence detection. PILER >De novo genome repeat finder. PILER-CR >Detection of CRISPR repeats in bacterial genomes. QSCORE >Compare two...ple alignments for benchmarking. PALS >Whole-genome alignment. PREFAB...2874 days ago
- Scarpa is a stand-alone scaffolding tool for NGS data. It can be used together with virtually any genome assembler and any NGS read ma...
2866 days ago
