Results for "Whole genome resequencing"
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Convenient conversions between genome assemblie. The liftover package makes it easy to remap genomic coordinates to a different genome assembly. More at https://github.com/aaronwolen/liftover https://www.bioconductor.org/help/workflows/liftOver/3013 days ago
- CrossMap is a program for convenient conversion of genome coordinates (or annotation files) between diff...FF/GTF, VCF. CrossMap is designed to liftover genome coordinates between assemblie...a program for aligning sequences to reference genome. We...
3013 days ago
- Spines Spines is a collection of software tools, developed and used by the Vertebrate Genome Biology Group at the Broad In...elized program for high-sensitivity, genome-wide synteny; Papaya, an all-....broadinstitute.org/science/programs/genome-biolo...
3013 days ago
- flo - same species annotations lift over pipeline Lift over is the process of transferring annotations from one genome assembly to another. Usually...lift over is done because there is a new, improved genome assem...
3011 days ago
- NCBI Remap. This tool is conceptually similar to liftOver in that in manages conversions between a pair of genome assemblies but it uses differ...r NCBI Remap. More at http://www.ncbi.nlm.nih.gov/genome/tools...
3010 days ago
- Although centromeres are essential for life and are the subject of extens...earch, centromere locations in yeast genomes are difficult to infer, and...erse applications, including de novo genome assembly, deconvolution of me...of all centromeres in a single yeast genome by ex...
3010 days ago
UCSC Genome Browser and Blat software !
This directory contains Genome Browser and Blat application binaries built for standalo...by running the binary with no arguments. The UCSC Genome Browser and Blat software are...lFor information about commercial licensing of the Genome Brows...3004 days ago
- Generic Genome Browser Version 2: A Tutorial for Administrators This is an extensive tutorial to take you through...atabase (no relational database required!) Later we will show how to set up a genome size...
3002 days ago
Ensembl comparative genomics resources
The Ensembl comparative genomics resources are one such reference set that...ve and reproducible analysis of chordate genome data. Ensembl computes pairwise and multiple whole-genome alignments from which large-s...cies by other projects including Ensembl Genomes and...2993 days ago
