Results for "Whole genome resequencing"
Bookmarks
In this exercise, a previously annotated gene will be used to measure the accuracy of d...approaches. GRAIL, GENSCAN, geneid, FGENESH, GenomeScan, GrailEXP and GENEWISE wi...prediction of initial exons in most cases. http://genome.crg.e...2824 days ago
- gKaKs is a codon-based genome-level Ka/Ks computation pipeline developed and based on p...rates (Ka, Ks and Ka/Ks) between a well-annotated genome and a non-annotated genome or...taset. It is especially useful for newly sequenced genomes that...
2821 days ago
Comparative genomics educational material and papers bookmarks
Alignment of the porcine genome against seven other mammalian genomes (Supplementary Information) identified homologous synteny blocks (HS...BRs (shared by pigs and cattle) were detected using the pig and human genomes as a...2749 days ago
Method in Comparative genomics !!
We present methods for the automatic determination of genome correspondence. The algorithms en...of duplicated genes in the yeast genome. The remaining ambiguities in...We used this test to revisit the genome of S. cerevisiae, reducing th...nal motif discovery. Based on the genome-wide...2749 days ago
- Redundans pipeline assists an assembly of heterozygous genomes.Program takes as input ass...turns scaffolded homozygous genome assembly, that should be ...ose the gaps resulting from genome assembly or scaffolding ...laptop for small-to-medium size genomes fle...
2818 days ago
OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembler) is a sequence assembly program...ate contigs/scaffolds assembled in a genome assembly project, in a proces...are important for scaffolding large genomes (multi-library support, bett...and algorithms is available at Genome Biolo...2810 days ago
- Fermi is a de novo assembler with a particular focus on assembling Illumina short sequence reads from a mammal-sized genome. In a...
2810 days ago
- These tutorials are written for hundreds of bioinformaticians trying to cope with large...n the world of sequencing. Merely five years back, genome sequencing of higher eukaryotes used to be very expensive endeavor. To get a genome of in...
2814 days ago
- The Sybil software package provides a primarily web-based front-end to comparative genome datasets warehoused in a chado relational...er Institute (JCVI) and the Institute for Genome Sciences (IGS) at the Univers...esearch projects that involve comparative genome analy...
2812 days ago
GAGE : Genome Assembly Gold-standard Evaluation
GAGE is an evaluation of the very latest large-scale genome assembly algorithms. We have organized this "b...n attempt to produce a realistic assessment of genome assembly software in a rapidl...of GAGE have now been published in the journal Genome Resea...2812 days ago
