BOL: Results for "abundance"

Results for "abundance"

- Jit@jit.aber
KAD: Assessing genome assemblies using K-mer copies in assemblies and K-mer abundance in Illumina reads
KAD is designed for evaluating the accuracy of nucleotide base quality of genome assemblies. Briefly, abundance of k-mers are quantified for both sequencing reads and assembly sequences. Comparison of the two values results in a single value per k-mer, K-mer Abundance Difference (KAD), which indi...
Tags: KAD, Assessing, genome, assemblies, K-mer, assemblies, abundance, Illumina, reads
1408 days ago
- Abhinav@abhinav
How to Estimating Abundance !
The abundance of a species in a dataset is considered as the fraction of reads that belong to that species. For example, if there is a dataset with 10,000,000 reads and 1,000,000 of them belong to E. coli, then the abundance of E. coli will be 0.1.
Tags: Estimating, Abundance
575 days ago