Results for "abundances"
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INC-Seq: accurate single molecule reads using nanopore sequencing
INC-Seq reads enabled accurate species-level classification, identification of species at 0.1 % abundance and robust quantification of relative abundances, providing a cheap and effective approach for pathogen detection and microbiome profiling on the MinION system.2366 days ago
kallisto: a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data
kallisto is a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads...1960 days ago
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Genome Assembly Tools and Software - PART1 !!
...mator for RNA-Seq Cufflinks assembles transcripts, estimates their abundances, and tests for differential e...arsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on...2701 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...tps://pachterlab.github.io/kallisto/ Sailfish Estimation of isoform abundances from reference sequences and...Reports organisms present in metagenomic samples and profiles their abundances (uses composition-based appro...2386 days ago
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kallisto: a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data
kallisto is a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads ...Tags: kallisto, program, quantify, abundances, transcripts, bulk, single-cell, RNA-Seq, data
1960 days ago
Comments
- ...listo quant produces three output files by default: abundances.h5 is a HDF5 binary file...t length information length. This file can be read in by sleuth abundances.tsv is a plaintext file...
1376 days ago
